Long lasting effects of the conversion from natural forest to poplar plantation on soil microbial communities.
Identifieur interne : 001784 ( Main/Exploration ); précédent : 001783; suivant : 001785Long lasting effects of the conversion from natural forest to poplar plantation on soil microbial communities.
Auteurs : Francesco Vitali [Italie] ; Giorgio Mastromei [Italie] ; Giuliana Senatore [Italie] ; Cesarea Caroppo [Italie] ; Enrico Casalone [Italie]Source :
- Microbiological research [ 1618-0623 ] ; 2016.
Descripteurs français
- KwdFr :
- Agriculture (MeSH), Arbres (croissance et développement), Bactéries (classification), Bactéries (croissance et développement), Bactéries (génétique), Bactéries (isolement et purification), Biodiversité (MeSH), Champignons (classification), Champignons (croissance et développement), Champignons (génétique), Champignons (isolement et purification), Microbiologie du sol (MeSH), Populus (croissance et développement).
- MESH :
- croissance et développement : Arbres, Bactéries, Champignons, Populus.
- génétique : Bactéries, Champignons.
- isolement et purification : Bactéries, Champignons.
- classification : Agriculture, Bactéries, Biodiversité, Champignons, Microbiologie du sol.
English descriptors
- KwdEn :
- Agriculture (MeSH), Bacteria (classification), Bacteria (genetics), Bacteria (growth & development), Bacteria (isolation & purification), Biodiversity (MeSH), Fungi (classification), Fungi (genetics), Fungi (growth & development), Fungi (isolation & purification), Populus (growth & development), Soil Microbiology (MeSH), Trees (growth & development).
- MESH :
- classification : Bacteria, Fungi.
- genetics : Bacteria, Fungi.
- growth & development : Bacteria, Fungi, Populus, Trees.
- isolation & purification : Bacteria, Fungi.
- Agriculture, Biodiversity, Soil Microbiology.
Abstract
In this study, we evaluate the long-lasting effects on soil microbial communities of a change within a single land-use category, specifically the conversion from natural forest to forest plantation. To minimize the effects of impacts other than land-use (i.e., climatic and anthropogenic), we chose three sites within a Natural Park, with homogeneous orographic and soil texture characteristics. We compared microbial diversity in a total of 156 soil samples from two natural mixed forests and a similar forest converted to poplar plantation about thirty years ago. The diversity and structure of bacterial and fungal communities were investigated by terminal restriction fragments length polymorphism (T-RFLP) analysis of the 16S-rRNA gene and the ITS-rDNA regions, respectively. Bacterial and fungal communities from the forest plantation, compared to those from natural forest soils, showed different community structure and lower α-diversity values, consistently with the significantly higher pH values and lower organic matter content of those soils. β-diversity values, the number of measured and estimated dominant OTUs, and their distribution among the three sites showed that microbial communities from the two natural forests were much more similar to each other than they were to communities from the poplar plantation, suggesting an effect of the forest conversion on the composition and diversity of soil microbial communities. α-diversity in cultivated forest soils had narrower temporal fluctuations than in natural forest soils, suggesting higher temporal stability of microbial communities. Overall, we demonstrated that the conversion from natural forest to forest plantation altered soil microbial communities, changing their structure, lowering their diversity, and causing a spatial and temporal homogenization.
DOI: 10.1016/j.micres.2015.10.002
PubMed: 26686617
Affiliations:
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Electronic address: enrico.casalone@unifi.it.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence</wicri:regionArea><wicri:noRegion>50019 Florence</wicri:noRegion></affiliation></author></analytic><series><title level="j">Microbiological research</title><idno type="eISSN">1618-0623</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agriculture (MeSH)</term><term>Bacteria (classification)</term><term>Bacteria (genetics)</term><term>Bacteria (growth & development)</term><term>Bacteria (isolation & purification)</term><term>Biodiversity (MeSH)</term><term>Fungi (classification)</term><term>Fungi (genetics)</term><term>Fungi (growth & development)</term><term>Fungi (isolation & purification)</term><term>Populus (growth & development)</term><term>Soil Microbiology (MeSH)</term><term>Trees (growth & development)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Agriculture (MeSH)</term><term>Arbres (croissance et développement)</term><term>Bactéries (classification)</term><term>Bactéries (croissance et développement)</term><term>Bactéries (génétique)</term><term>Bactéries (isolement et purification)</term><term>Biodiversité (MeSH)</term><term>Champignons (classification)</term><term>Champignons (croissance et développement)</term><term>Champignons (génétique)</term><term>Champignons (isolement et purification)</term><term>Microbiologie du sol (MeSH)</term><term>Populus (croissance et développement)</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacteria</term><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Arbres</term><term>Bactéries</term><term>Champignons</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacteria</term><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Bacteria</term><term>Fungi</term><term>Populus</term><term>Trees</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Bactéries</term><term>Champignons</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Bacteria</term><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Bactéries</term><term>Champignons</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Agriculture</term><term>Biodiversity</term><term>Soil Microbiology</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Agriculture</term><term>Bactéries</term><term>Biodiversité</term><term>Champignons</term><term>Microbiologie du sol</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In this study, we evaluate the long-lasting effects on soil microbial communities of a change within a single land-use category, specifically the conversion from natural forest to forest plantation. To minimize the effects of impacts other than land-use (i.e., climatic and anthropogenic), we chose three sites within a Natural Park, with homogeneous orographic and soil texture characteristics. We compared microbial diversity in a total of 156 soil samples from two natural mixed forests and a similar forest converted to poplar plantation about thirty years ago. The diversity and structure of bacterial and fungal communities were investigated by terminal restriction fragments length polymorphism (T-RFLP) analysis of the 16S-rRNA gene and the ITS-rDNA regions, respectively. Bacterial and fungal communities from the forest plantation, compared to those from natural forest soils, showed different community structure and lower α-diversity values, consistently with the significantly higher pH values and lower organic matter content of those soils. β-diversity values, the number of measured and estimated dominant OTUs, and their distribution among the three sites showed that microbial communities from the two natural forests were much more similar to each other than they were to communities from the poplar plantation, suggesting an effect of the forest conversion on the composition and diversity of soil microbial communities. α-diversity in cultivated forest soils had narrower temporal fluctuations than in natural forest soils, suggesting higher temporal stability of microbial communities. Overall, we demonstrated that the conversion from natural forest to forest plantation altered soil microbial communities, changing their structure, lowering their diversity, and causing a spatial and temporal homogenization. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26686617</PMID><DateCompleted><Year>2016</Year><Month>10</Month><Day>05</Day></DateCompleted><DateRevised><Year>2016</Year><Month>12</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1618-0623</ISSN><JournalIssue CitedMedium="Internet"><Volume>182</Volume><PubDate><Year>2016</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Microbiological research</Title><ISOAbbreviation>Microbiol Res</ISOAbbreviation></Journal><ArticleTitle>Long lasting effects of the conversion from natural forest to poplar plantation on soil microbial communities.</ArticleTitle><Pagination><MedlinePgn>89-98</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.micres.2015.10.002</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S0944-5013(15)30015-X</ELocationID><Abstract><AbstractText>In this study, we evaluate the long-lasting effects on soil microbial communities of a change within a single land-use category, specifically the conversion from natural forest to forest plantation. To minimize the effects of impacts other than land-use (i.e., climatic and anthropogenic), we chose three sites within a Natural Park, with homogeneous orographic and soil texture characteristics. We compared microbial diversity in a total of 156 soil samples from two natural mixed forests and a similar forest converted to poplar plantation about thirty years ago. The diversity and structure of bacterial and fungal communities were investigated by terminal restriction fragments length polymorphism (T-RFLP) analysis of the 16S-rRNA gene and the ITS-rDNA regions, respectively. Bacterial and fungal communities from the forest plantation, compared to those from natural forest soils, showed different community structure and lower α-diversity values, consistently with the significantly higher pH values and lower organic matter content of those soils. β-diversity values, the number of measured and estimated dominant OTUs, and their distribution among the three sites showed that microbial communities from the two natural forests were much more similar to each other than they were to communities from the poplar plantation, suggesting an effect of the forest conversion on the composition and diversity of soil microbial communities. α-diversity in cultivated forest soils had narrower temporal fluctuations than in natural forest soils, suggesting higher temporal stability of microbial communities. Overall, we demonstrated that the conversion from natural forest to forest plantation altered soil microbial communities, changing their structure, lowering their diversity, and causing a spatial and temporal homogenization. </AbstractText><CopyrightInformation>Copyright © 2015 Elsevier GmbH. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vitali</LastName><ForeName>Francesco</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mastromei</LastName><ForeName>Giorgio</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Senatore</LastName><ForeName>Giuliana</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Caroppo</LastName><ForeName>Cesarea</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Casalone</LastName><ForeName>Enrico</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Department of Biology, University of Florence, Via Madonna del Piano 6, Sesto Fiorentino, 50019 Florence, Italy. Electronic address: enrico.casalone@unifi.it.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>10</Month><Day>20</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Microbiol Res</MedlineTA><NlmUniqueID>9437794</NlmUniqueID><ISSNLinking>0944-5013</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000383" MajorTopicYN="N">Agriculture</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D044822" MajorTopicYN="Y">Biodiversity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005658" MajorTopicYN="N">Fungi</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="N">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Bacterial communities</Keyword><Keyword MajorTopicYN="N">Forest soil</Keyword><Keyword MajorTopicYN="N">Fungal communities</Keyword><Keyword MajorTopicYN="N">Land-use</Keyword><Keyword MajorTopicYN="N">T-RFLP</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>04</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2015</Year><Month>09</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>10</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>12</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>12</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>10</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26686617</ArticleId><ArticleId IdType="pii">S0944-5013(15)30015-X</ArticleId><ArticleId IdType="doi">10.1016/j.micres.2015.10.002</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Italie</li></country></list><tree><country name="Italie"><noRegion><name sortKey="Vitali, Francesco" sort="Vitali, Francesco" uniqKey="Vitali F" first="Francesco" last="Vitali">Francesco Vitali</name></noRegion><name sortKey="Caroppo, Cesarea" sort="Caroppo, Cesarea" uniqKey="Caroppo C" first="Cesarea" last="Caroppo">Cesarea Caroppo</name><name sortKey="Casalone, Enrico" sort="Casalone, Enrico" uniqKey="Casalone E" first="Enrico" last="Casalone">Enrico Casalone</name><name sortKey="Mastromei, Giorgio" sort="Mastromei, Giorgio" uniqKey="Mastromei G" first="Giorgio" last="Mastromei">Giorgio Mastromei</name><name sortKey="Senatore, Giuliana" sort="Senatore, Giuliana" uniqKey="Senatore G" first="Giuliana" last="Senatore">Giuliana Senatore</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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